According to this block diagram, the APIM is not installed (I think) if you don't have any of the "green" box items/functions. If the ACM is bad, you can get one used for under $100...but it also needs to be programmed (configured) to your vehicle unless it came out of a TC that had the same trim levels and options.
Your Ford dealer can easily connect their computer to the TC and see what modules are installed and firmware and configuration file version. I assumed they did this during the diagnosis and found error messages related to the APIM. Apparently not. They shouldn't have to guess about any of this.
APIM.pdf